By ELISABETH BUMILLER

WASHINGTON — Adm. Mike Mullen, chairman of the Joint Chiefs of Staff, said Thursday that he believed that the government of Pakistan had “sanctioned” the killing of a Pakistani journalist who had written scathing reports about the infiltration of Islamic militants into the country’s security services.

Admiral Mullen, who is due to retire at the end of September, is the first American official to publicly accuse Pakistan, an American ally, of the kidnapping, torture and death of the journalist, Saleem Shahzad, 40. His comments about a case that has intensified criticism of the government in Islamabad are certain to further aggravate the poisoned relationship between the United States and Pakistan, where Osama bin Laden was killed in an American raid in May.

Admiral Mullen said he could not specifically tie Mr. Shahzad’s death to Pakistan’s powerful spy agency, the Directorate for Inter-Services Intelligence, known as the ISI, although Obama administration officials believe that the ISI ordered the killing. But Admiral Mullen made clear that he thought Pakistani officials were complicit in Mr. Shahzad’s death. ….

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